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1

Effect of disease-associated SLC9A9 mutations on protein–protein interaction networks: implications for molecular mechanisms for ADHD and autism

Zhang-James, Yanli, Vaudel, Marc, Mjaavatten, Olav, Berven, Frode S., Haavik, Jan, Faraone, Stephen V.

Journal:

ADHD Attention Deficit and Hyperactivity Disorders

Année:

2019

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2019

2

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches

Marc Vaudel, Harald Barsnes, Frode S. Berven, Albert Sickmann, Lennart Martens

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 176 KB

english, 2011

3

Analysis of two IgM isotypes in Atlantic salmon and brown trout

Ivar Hordvik, Frode S Berven, Stein Tore Solem, Frode Hatten, Curt Endresen

Journal:

Molecular Immunology

Année:

2002

Langue:

english

Fichier:

PDF, 331 KB

english, 2002

4

Arachnoid cysts do not contain cerebrospinal fluid: A comparative chemical analysis of arachnoid cyst fluid and cerebrospinal fluid in adults

Magnus Berle, Knut G Wester, Rune J Ulvik, Ann C Kroksveen, Øystein A Haaland, Mahmood Amiry-Moghaddam, Frode S Berven, Christian A Helland

Journal:

Fluids and Barriers of the CNS

Année:

2010

Langue:

english

Fichier:

PDF, 202 KB

english, 2010

5

Viewing the proteome: How to visualize proteomics data?

Oveland, Eystein, Muth, Thilo, Rapp, Erdmann, Martens, Lennart, Berven, Frode S., Barsnes, Harald

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2015

6

PeptideShaker enables reanalysis of MS-derived proteomics data sets

Vaudel, Marc, Burkhart, Julia M, Zahedi, René P, Oveland, Eystein, Berven, Frode S, Sickmann, Albert, Martens, Lennart, Barsnes, Harald

Journal:

Nature Biotechnology

Année:

2015

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2015

7

How should quality of life assessment be integrated in the evaluation of patients with acute myeloid leukemia?

Tvedt, Tor Henrik Anderson, Reikvam, Håkon, Aasebø, Elise, Hernandez-Valladares, Maria, Berven, Frode S., Selheim, Frode, Bruserud, Øystein

Journal:

Expert Review of Quality of Life in Cancer Care

Année:

2016

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2016

8

Effects of insulin and pathway inhibitors on the PI3K-Akt-mTOR phosphorylation profile in acute myeloid leukemia cells

Nepstad, Ina, Hatfield, Kimberley Joanne, Grønningsæter, Ida Sofie, Aasebø, Elise, Hernandez-Valladares, Maria, Hagen, Karen Marie, Rye, Kristin Paulsen, Berven, Frode S., Selheim, Frode, Reikvam, Håk

Journal:

Signal Transduction and Targeted Therapy

Année:

2019

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2019

9

Multiple polypeptide forms observed in two-dimensional gels of Methylococcus capsulatus (Bath) polypeptides are generated during the separation procedure

Frode S. Berven, Odd A. Karlsen, J. Colin Murrell, Harald B. Jensen

Journal:

ELECTROPHORESIS

Année:

2003

Langue:

english

Fichier:

PDF, 166 KB

english, 2003

10

Biomarker discovery in mass spectral profiles by means of selectivity ratio plot

Tarja Rajalahti, Reidar Arneberg, Frode S. Berven, Kjell-Morten Myhr, Rune J. Ulvik, Olav M. Kvalheim

Journal:

Chemometrics and Intelligent Laboratory Systems

Année:

2009

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2009

11

compomics-utilities: an open-source Java library for computational proteomics

Harald Barsnes, Marc Vaudel, Niklaas Colaert, Kenny Helsens, Albert Sickmann, Frode S Berven, Lennart Martens

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

12

Protein profiling reveals inter-individual protein homogeneity of arachnoid cyst fluid and high qualitative similarity to cerebrospinal fluid

Magnus Berle, Ann C Kroksveen, Øystein A Haaland, Thin T Aye, Jill A Opsahl, Eystein Oveland, Knut Wester, Rune J Ulvik, Christian A Helland, Frode S Berven

Journal:

Fluids and Barriers of the CNS

Année:

2011

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2011

13

Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv

Hiwa Målen, Frode S. Berven, Kari E. Fladmark, Harald G. Wiker

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 425 KB

english, 2007

14

Membrane and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies

Hiwa Målen, Frode S. Berven, Tina Søfteland, Magnus Øverlie Arntzen, Clive S. D'Santos, Gustavo Antonio De Souza, Harald G. Wiker

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 377 KB

english, 2008

15

Pre-analytical influence on the low molecular weight cerebrospinal fluid proteome

Frode S. Berven, Ann C. Kroksveen, Magnus Berle, Tarja Rajalahti, Kristian Flikka, Reidar Arneberg, Kjell-Morten Myhr, Christian Vedeler, Olav M. Kvalheim, Rune J. Ulvik

Journal:

PROTEOMICS - Clinical Applications

Année:

2007

Langue:

english

Fichier:

PDF, 610 KB

english, 2007

16

Analysing the outer membrane subproteome ofMethylococcus capsulatus(Bath) using proteomics and novel biocomputing tools

Frode S. Berven, Odd André Karlsen, Anne Hege Straume, Kristian Flikka, J. Colin Murrell, Anne Fjellbirkeland, Johan R. Lillehaug, Ingvar Eidhammer, Harald B. Jensen

Journal:

Archives of Microbiology

Année:

2006

Langue:

english

Fichier:

PDF, 455 KB

english, 2006

17

Characterization of a prokaryotic haemerythrin from the methanotrophic bacterium Methylococcus capsulatus (Bath)

Odd A. Karlsen, Linda Ramsevik, Live J. Bruseth, Øivind Larsen, Annette Brenner, Frode S. Berven, Harald B. Jensen, Johan R. Lillehaug

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 601 KB

english, 2005

18

A monoclonal antibody distinguishes between two IgM heavy chain isotypes in Atlantic salmon and brown trout: Protein characterization, 3D modeling and epitope mapping

Atif Kamil, Knut Falk, Animesh Sharma, Arnt Raae, Frode Berven, Erling Olaf Koppang, Ivar Hordvik

Journal:

Molecular Immunology

Année:

2011

Langue:

english

Fichier:

PDF, 910 KB

english, 2011

19

Minimization of side reactions during Lys Tag derivatization of C-terminal lysine peptides

Olav Mjaavatten, Gyrid Nygaard, Frode S. Berven, Frode Selheim

Journal:

Analytica Chimica Acta

Année:

2012

Langue:

english

Fichier:

PDF, 674 KB

english, 2012

20

Engineering, Biophysical Characterisation and Binding Properties of a Soluble Mutant form of Annexin A2 Domain IV that Adopts a Partially Folded Conformation

Ingvild Aukrust, Lasse Evensen, Hanne Hollås, Frode Berven, R. Andrew Atkinson, Gilles Travé, Torgeir Flatmark, Anni Vedeler

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2006

21

A Multivariate Approach To Reveal Biomarker Signatures for Disease Classification: Application to Mass Spectral Profiles of Cerebrospinal Fluid from Patients with Multiple Sclerosis

Rajalahti, Tarja, Kroksveen, Ann C., Arneberg, Reidar, Berven, Frode S., Vedeler, Christian A., Myhr, Kjell-Morten, Kvalheim, Olav M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.66 MB

english, 2010

22

Chromosome 19 Annotations with Disease Speciation: A First Report from the Global Research Consortium

Nilsson, Carol L., Berven, Frode, Selheim, Frode, Liu, Huiling, Moskal, Joseph R., Kroes, Roger A., Sulman, Erik P., Conrad, Charles A., Lang, Frederick F., Andrén, Per E., Nilsson, Anna, Carlsohn, El

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.64 MB

english, 2013

23

Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM

Kroksveen, Ann C., Aasebø, Elise, Vethe, Heidrun, Van Pesch, Vincent, Franciotta, Diego, Teunissen, Charlotte E., Ulvik, Rune J., Vedeler, Christian, Myhr, Kjell-Morten, Barsnes, Harald, Berven, Frode

Journal:

Journal of Proteomics

Année:

2013

Langue:

english

Fichier:

PDF, 816 KB

english, 2013

24

Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia

Haaland, Ingvild, Opsahl, Jill A, Berven, Frode S, Reikvam, Håkon, Fredly, Hanne K, Haugse, Ragnhild, Thiede, Bernd, McCormack, Emmet, Lain, Sonia, Bruserud, Øystein, Gjertsen, Bjørn

Journal:

Molecular Cancer

Année:

2014

Langue:

english

Fichier:

PDF, 428 KB

english, 2014

25

Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines

Aasebø, Elise, Vaudel, Marc, Mjaavatten, Olav, Gausdal, Gro, Van der Burgh, Arthur, Gjertsen, Bjørn Tore, Døskeland, Stein Ove, Bruserud, Øystein, Berven, Frode S., Selheim, Frode

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 678 KB

english, 2014

26

Pretreatment of Mass Spectral Profiles: Application to Proteomic Data

Arneberg, Reidar, Rajalahti, Tarja, Flikka, Kristian, Berven, Frode S., Kroksveen, Ann C., Berle, Magnus, Myhr, Kjell-Morten, Vedeler, Christian A., Ulvik, Rune J., Kvalheim, Olav M.

Journal:

Analytical Chemistry

Année:

2007

Langue:

english

Fichier:

PDF, 469 KB

english, 2007

27

Optimizing Performance of Glycopeptide Capture for Plasma Proteomics

Berven, Frode S., Ahmad, Rushdy, Clauser, Karl R., Carr, Steven A.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 750 KB

english, 2010

28

Use of Stable Isotope Dimethyl Labeling Coupled to Selected Reaction Monitoring to Enhance Throughput by Multiplexing Relative Quantitation of Targeted Proteins

Aye, Thin Thin, Low, Teck Yew, Bjørlykke, Yngvild, Barsnes, Harald, Heck, Albert J. R., Berven, Frode S.

Journal:

Analytical Chemistry

Année:

2012

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2012

29

Shedding light on black boxes in protein identification

Vaudel, Marc, Venne, A. Saskia, Berven, Frode S., Zahedi, René P., Martens, Lennart, Barsnes, Harald

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 364 KB

english, 2014

30

IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT

Arntzen, Magnus Ø., Koehler, Christian J., Barsnes, Harald, Berven, Frode S., Treumann, Achim, Thiede, Bernd

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2011

31

In-depth Characterization of the Cerebrospinal Fluid (CSF) Proteome Displayed Through the CSF Proteome Resource (CSF-PR)

Guldbrandsen, Astrid, Vethe, Heidrun, Farag, Yehia, Oveland, Eystein, Garberg, Hilde, Berle, Magnus, Myhr, Kjell-Morten, Opsahl, Jill A., Barsnes, Harald, Berven, Frode S.

Journal:

Molecular & Cellular Proteomics

Année:

2014

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2014

32

Cerebrospinal fluid proteomics in multiple sclerosis

Kroksveen, Ann C., Opsahl, Jill A., Guldbrandsen, Astrid, Myhr, Kjell-Morten, Oveland, Eystein, Torkildsen, Øivind, Berven, Frode S.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Année:

2015

Langue:

english

Fichier:

PDF, 413 KB

english, 2015

33

Carboxyl-Ester Lipase Maturity-Onset Diabetes of the Young Disease Protein Biomarkers in Secretin-Stimulated Duodenal Juice

Bjorlykke, Yngvild, Vethe, Heidrun, Vaudel, Marc, Barsnes, Harald, Berven, Frode S., Tjora, Erling, Raeder, Helge

Journal:

Journal of Proteome Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2015

34

Association of chromosome 19 to lung cancer genotypes and phenotypes

Wang, Xiangdong, Zhang, Yong, Nilsson, Carol L., Berven, Frode S., Andrén, Per E., Carlsohn, Elisabet, Horvatovich, Peter, Malm, Johan, Fuentes, Manuel, Végvári, Ákos, Welinder, Charlotte, Fehniger, T

Journal:

Cancer and Metastasis Reviews

Année:

2015

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2015

35

Konsensusprotokoll zur Standardisierung von Entnahme und Biobanking des Liquor cerebrospinalis 1 / A consensus protocol for the standardisation of cerebrospinal fluid collection and biobanking

Teunissen, Charlotte E., Petzold, Axel, Bennett, Jeffrey L., Berven, Frode S., Brundin, Lou, Comabella, Manuel, Franciotta, Diego, Federiksen, Jette L., Fleming, John O., Furlan, Roberto, Hintzen, Rog

Journal:

Laboratoriums Medizin

Année:

2010

Fichier:

PDF, 178 KB

2010

36

Distributed and interactive visual analysis of omics data

Farag, Yehia, Berven, Frode S., Jonassen, Inge, Petersen, Kjell, Barsnes, Harald

Journal:

Journal of Proteomics

Année:

2015

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2015

37

Particulate yeast β-glucan is internalized by RAW 264.7 macrophages and reduces the activity of the tumor-associated protease legumain

Berven, Lise, Skjeldal, Frode Miltzow, Prydz, Kristian, Zubaidi, Layla Mohammad Khader, Ballance, Simon, Thidemann Johansen, Harald, Samuelsen, Anne Berit C.

Journal:

Bioactive Carbohydrates and Dietary Fibre

Année:

2015

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2015

38

Erratum to: Association of chromosome 19 to lung cancer genotypes and phenotypes

Wang, Xiangdong, Zhang, Yong, Nilsson, Carol L., Berven, Frode S., Andrén, Per E., Carlsohn, Elisabet, Horvatovich, Peter, Malm, Johan, Fuentes, Manuel, Végvári, Ákos, Welinder, Charlotte, Fehniger, T

Journal:

Cancer and Metastasis Reviews

Année:

2015

Fichier:

PDF, 190 KB

2015

39

Erratum to: Association of chromosome 19 to lung cancer genotypes and phenotypes

Wang, Xiangdong, Zhang, Yong, Nilsson, Carol L., Berven, Frode S., Andrén, Per E., Carlsohn, Elisabet, Horvatovich, Peter, Malm, Johan, Fuentes, Manuel, Végvári, Ákos, Welinder, Charlotte, Fehniger, T

Journal:

Cancer and Metastasis Reviews

Année:

2015

Langue:

english

Fichier:

PDF, 190 KB

english, 2015

40

Proteomic Analysis of Minimally Damaged Renal Tubular Tissue from Two-Kidney-One-Clip Hypertensive Rats Demonstrates Extensive Changes Compared to Tissue from Controls

Finne, Kenneth, Marti, Hans-Peter, Leh, Sabine, Skogstrand, Trude, Vethe, Heidrun, Tenstad, Olav, Berven, Frode S., Scherer, Andreas, Vikse, Bj�rn Egil

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2016

41

Exploring the potential of public proteomics data

Vaudel, Marc, Verheggen, Kenneth, Csordas, Attila, Raeder, Helge, Berven, Frode S., Martens, Lennart, Vizcaíno, Juan A., Barsnes, Harald

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 569 KB

english, 2016

42

Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows

Aasebø, Elise, Mjaavatten, Olav, Vaudel, Marc, Farag, Yehia, Selheim, Frode, Berven, Frode, Bruserud, Øystein, Hernandez-Valladares, Maria

Journal:

Journal of Proteomics

Année:

2016

Langue:

english

Fichier:

PDF, 897 KB

english, 2016

43

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients

Hernandez-Valladares, Maria, Aasebø, Elise, Mjaavatten, Olav, Vaudel, Marc, Bruserud, Øystein, Berven, Frode, Selheim, Frode

Journal:

Biological Procedures Online

Année:

2016

Langue:

english

Fichier:

PDF, 994 KB

english, 2016

44

In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis; presenting a comprehensive picture of pathways and processes affected by multiple sclerosis

Kroksveen, Ann Cathrine, Guldbrandsen, Astrid, Vaudel, Marc, Lereim, Ragnhild Reehorst, Barsnes, Harald, Myhr, Kjell-Morten, Torkildsen, Øyvind, Berven, Frode S.

Journal:

Journal of Proteome Research

Année:

2016

Langue:

english

Fichier:

PDF, 5.26 MB

english, 2016

45

Rethinking the role of osteopontin in human acute myeloid leukemia

Brenner, Annette K., Aasebø, Elise, Hernandez-Valladares, Maria, Selheim, Frode, Berven, Frode, Bruserud, Øystein

Journal:

Leukemia and Lymphoma

Année:

2017

Langue:

english

Fichier:

PDF, 703 KB

english, 2017

46

CSF-PR 2.0: An Interactive Literature Guide to Quantitative Cerebrospinal Fluid Mass Spectrometry Data from Neurodegenerative Disorders

Guldbrandsen, Astrid, Farag, Yehia, Kroksveen, Ann Cathrine, Oveland, Eystein, Lereim, Ragnhild R., Opsahl, Jill A., Myhr, Kjell-Morten, Berven, Frode S., Barsnes, Harald

Journal:

Molecular & Cellular Proteomics

Année:

2017

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2017

47

Quantitative analyses of the hepatic proteome of methylmercury-exposed Atlantic cod (Gadus morhua) suggest oxidative stress-mediated effects on cellular energy metabolism

Yadetie, Fekadu, Bjørneklett, Silje, Garberg, Hilde Kristin, Oveland, Eystein, Berven, Frode, Goksøyr, Anders, Karlsen, Odd André

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2016

48

Quantitative proteomics analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod ( Gadus morhua ) treated with PCB 153

Yadetie, Fekadu, Oveland, Eystein, Døskeland, Anne, Berven, Frode, Goksøyr, Anders, Karlsen, Odd André

Journal:

Aquatic Toxicology

Année:

2017

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2017

49

1,25-Dihydroxyvitamin-D3 induces brain proteomic changes in cuprizone mice during remyelination involving calcium proteins

Oveland, Eystein, Nystad, Agnes, Berven, Frode, Myhr, Kjell-Morten, Torkildsen, Øivind, Wergeland, Stig

Journal:

Neurochemistry International

Année:

2017

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2017

50

Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows

Verheggen, Kenneth, Raeder, Helge, Berven, Frode S., Martens, Lennart, Barsnes, Harald, Vaudel, Marc

Journal:

Mass Spectrometry Reviews

Année:

2017

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2017